miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|223418869|gb|GO008788.1|GO008788 GAGACCAAAACATCATCTCCACCGAGTAACCACGAAACTTTCAAGTGCATTCTCTGCTCTTGTGCTTCTCATGCTGCTTG
TCTCAGCTTCAGAGGCTGCAATTTCATGCAGTGATGTGATTAAGGACTTGAAACCTTGTGTTAGTTACTTGGTGAGTGGG
AGTGGGAAGCCACCAGTTGCTTGTTGCTCTGGAGCTAAAGCTCTTGCCTCTGCTGTATCAACCTCAGAGGATAAGAAAGC
TGCTTGTAACAGCATCAAGTCCACTGCCAAAAGTATCAAAATGAACTCACAATTGGCTGAGGCTCTTCCTGGAAACTGTG
GAATAAATACGCCCATCAGTGTCTCCCCTGATGCAGACTACTCCAAGGTTGGTTAGAGCTTCGAAGTTGGAACTTGAGGA
GGGTGTTCAGTGAATGTTGAACATTTTTCTACTGGCATATCATGTGTGGGAATATAAAACAATTTTGTAATAAACAGGAA
TCTACCCATGGGAATTTCTTTATTATGTCCGTGTTTTTGTTTTTTATATGTTGTTTCCAATCTATCTATTACTCCCTCCG
TTCCAATTTGTTTGTTGTTTTAGCTTTTGCTAGAAATTTCAAAATGGTTGTTGTTTATATATTCAATGCATTTTTTTCCA
TTTTCTTCCAAAAAA




Most similar to sp|Q9ZPW9|NLTP8_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZPW9|NLTP8_ARATH Non-specific lipid-transfer protein 8
           OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1
          Length = 116

 Score =  113 bits (283), Expect = 9e-25
 Identities = 52/91 (57%), Positives = 65/91 (71%)
 Frame = +2

Query: 101 ISCSDVIKDLKPCVSYLVSGSGKPPVACCSGAKALASAVSTSEDKKAACNSIKSTAKSIK 280
           ISCS V++DL+PCVSYL SGSG PP  CC G K+LA+A +TS DKKAAC  IKS A S+ 
Sbjct: 26  ISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT 85

Query: 281 MNSQLAEALPGNCGINTPISVSPDADYSKVG 373
           +  +LA+AL  NCG + P+  SP  D + VG
Sbjct: 86  VKPELAQALASNCGASLPVDASPTVDCTTVG 116